Self-Organization in Science and Society

Spring 2013  STSH 4580 Mon-Thurs 12-2, Carnegie 206. Instructor: Ron Eglash.

To contact instructor:
Office Hours: Mon 10:00-12:00 and by appointment, 5502 Sage. Email: eglash@rpi.edu, phone: 276-2048. Course webpage: www.rpi.edu/~eglash/eglash.dir/selforg.html

Description
Self-organization has become an increasingly important phenomenon in both the natural sciences and engineering. Self-assembly of molecular structure is critical to nanotechnology; self-regulating ecosystems are modeled in biology, and so on. But recursive loops in which things govern themselves are also foundational to society: democracy is the people governing the people; social networks on the internet arise by self-assembly, and many indigenous societies use self-organization to create sustainable ways of life. This course will introduce students to models of self-organization in natural science and engineering, and examine their potential application to society, politics, and ethics. No prerequisites are required.

Learning Outcomes

• Students will be able to reflect on the fundamental principles and classic case studies of self-organization in their short essays
• Students will be able to apply these basic understandings across disciplines (biology, sociology), scales (nano, micro, macro) and domains (natural and artificial, living and nonliving) in their short essays.
• Students will be able to conduct a research project in which they investigate some aspect or example of self-organization.

Academic Honesty

While ideas are available to everyone, credit for ideas, and the particular text used to express them, belongs to their originator. Plagiarism occurs when a student attempts to pass the ideas or words of someone else as their own. It is surprisingly easy to do. For example, students who are not writing in their first language will sometimes try to use a sentence from another written text, simply because they are worried about their grammar. Plagiarism also occurs when a quotation is reworded in an attempt to avoid citation—always make sure the sources of your quotations are specifically cited. The internet makes plagiarism particularly tempting, since you can copy and paste from the web to your paper. Recycling your own paper from another course would not be plagiarism, but it would be academic dishonesty and thus subject to the same penalties, which include failing the course (a grade of “F”).

Special Needs
Please contact me if you have special needs such as disability or religious holidays.

Requirements:
Evaluation will be based on the 4 short “reading reflection” papers (10% each), the research project paper (30%), the research project presentation (10%), and class participation (20%). Note that the syllabus tells you the reading that will be discussed for that day. You need to have done the reading before you arrive, and you are required to bring the reading to class so that we can discuss the texts in detail. Many class sessions you will need your laptop as well to play with simulations and other tools.

Short papers and research project:
Short “reading reflection” papers should be about 5 pages (double-spaced, with proper citations); these allow you to demonstrate your understanding of the material. The final research project paper should be 8-10 pages (double-spaced, with proper citations); the instructor will help you find a suitable topic for your research.  Research projects can be done by groups, in which case the paper will be longer, and each individual is responsible for a different section of the paper. Working in a group is a great way to  bring together more than one discipline (eg math and anthropology, or computing and environmentalism). Research project presentations may also be done by the group.

Texts:

Mitchell, Melanie. Complexity: a Guided Tour. Oxford University Press, 2009

Eglash, Ron. African Fractals: Modern Computing And Indigenous Design. Rutgers University Press1999

Kelly, Kevin. Out of control : the new biology of machines, social systems and the economic world. Reading, Mass. : Addison-Wesley, 1995. Online at http://www.kk.org/outofcontrol/contents.php

Rheingold, Howard. Smart Mobs: The Next Social Revolution. Basic Books 2003.

Course Schedule:

Part I: Foundations of Self-Organization

Jan 24:
Lecture: intro to course
NOVA video: http://www.pbs.org/wgbh/nova/nature/emergence.html.
Video discussion
Further examples in video:

• Random distribution – not complex system: http://www.youtube.com/watch?v=xDIyAOBa_yU
• Floating magnets self-organize: http://www.youtube.com/watch?v=KPP-4-LEHXQ
• Slime mold “solves” maze: http://www.youtube.com/watch?v=F3z_mdaQ5ac&feature=related
• Slime mold maps tokoyo rail system: http://www.youtube.com/watch?v=GwKuFREOgmo&feature=related
• Bees drive away hornet: http://www.youtube.com/watch?v=X7l75XUQ8-M

Lectures: intro to self-org, history of self-org

Jan 28. Readings: Mitchell ch 1. Couzin, I.D. & Krause, J. (2003) Self-organization and collective behavior in vertebrates. Advances in the Study of Behavior 32, 1-75.

In class: http://www.youtube.com/watch?v=uIH-p1OSRZw wildebeest migration – start at 1:20 and observe how split evolves over time.
Flocking simulation at http://www.lalena.com/AI/Flock/; others at https://www1.ethz.ch/soms/research/Videos/#simulations.
Mosh pit sim: http://mattbierbaum.github.com/moshpits.js/
Lecture: self-organization in vetebrate collective behavior

Jan 31
Reading: Mitchell ch 2, Eglash “Cybernetics and American Youth Subculture”: Nonlinear dynamics as low-dimensional self-organization.

In-class: we will experiment with:

• switching between time series and histogram (make sure you choose the equation c(1-x) in the drop down menu): http://math.bu.edu/DYSYS/applets/Iteration.html
• switching between time series and bifurcation map: http://highlyrefined.net/benwei/logistic/applet/
• changing initial value x(0) and reproduction rate a in “cobweb diagram” http://www.lboro.ac.uk/departments/ma/gallery/doubling/
  

Lectures: Cybernetics and Intro to chaos theory

Feb 4 Reading: Turnbull, D. “Rendering Turbulence Orderly.” Social Studies of Science, Vol. 25 , No. 1, 9-33. Feb., 1995
In class: Video, “The Strange New Science of Chaos.”

Feb 7 Mitchell ch 5, 18. Lectures: Intro to STS and Darwin: an STS perspective

Feb 11 Mitchell ch 7, 12. Lecture: Measuring Complexity 

Feb 14 Mitchell ch 17. In class: Video “Hunting the Hidden Dimension” http://www.pbs.org/wgbh/nova/fractals/program.html
Lecture: Fractal Dimension

Feb 19 (tuesday) Mitchell ch 8-10. In class: experiment with CA at http://www.ccd.rpi.edu/eglash/temp/Life32v111.zip or http://sourceforge.net/projects/golly/
Lecture: Intro to Life32

Part II: Applications in African Studies

Feb 21 --  1st paper due. 

• African Fractals ch 1. 
• In-class laptop experiment:  African fractals design tool at http://www.csdt.rpi.edu

 using simulations from math (Koch, Peano, etc) and nature (fern, acacia, etc.).

Feb 25

• African Fractals ch 2-3.
• In-class laptop experiment: African fractals design tool at http://www.csdt.rpi.edu using simulations from architecture. Diffusion limited aggregation at http://apricot.polyu.edu.hk/~lam/dla/dla.html.
• Lecture: Comparison of Native American and African ethnomathematics

Feb 28

• African Fractals ch 4-7 (up to page 100).
• In-class laptop experiment: Cornrows, and Mangbetu design tool, and African fractals design tool at http://www.csdt.rpi.edu using simulations from various designs.

March 4  

• African Fractals ch 7 (pp 101-108) to ch 8.
• In-class laptop experiment: Simulation of Owari at http://www.ccd.rpi.edu/Eglash/csdt/african/owari.htm. CA experiment: go to Mirek’s CA page at http://www.mirekw.com/ca/mjcell/mjcell.html. Click on “start MJ cell.” In the applet use the default “Generations” from the top drop-down menu and “BelZhab” from the next. Then use “Cyclic CA” from the top menu and “cyclic spirals” from the next.
• Optional: For a technical analysis see “Quantifying Self-Organization in Cyclic Cellular Automata” at http://www.cscs.umich.edu/~crshalizi/research/FN03.pdf and http://www.rpi.edu/~eglash/isgem.dir/texts.dir/OwariII.pdf. For controversial claims about the social construction of CA see S. Helmreich, Silicon Second Nature.

March  7

• African Fractals ch 10.
• In-class laptop experiment: Experiment with negative and positive feedback using fractals at http://csdt.rpi.edu/african/African_Fractals/culture15.html and using Life32
• Optional: For critical claims about the social construction of CA see S. Helmreich, Silicon Second Nature. For a more positive view of the social implications of CA see T. Terranova, Network Culture.

March 11 Spring break

March 15 Spring Break

March 18

• African Fractals ch 11-14. Lecture: Cultural Politics. Lecture: Europe comes late to the fractal party  

Part III: Self-organization: from natural to social ecologies

March  21 Second paper due

Out of Control ch 1-4. Lecture: evolution and technology. Watch in class: http://www.ted.com/talks/kevin_kelly_on_how_technology_evolves.html

March 25

• Hardin, Garrett. “Tragedy of the Commons.” Science 162, 1243-1248 (1968) http://www.sciencemag.org.libproxy.rpi.edu/cgi/content/full/162/3859/1243
• Hofstadter, Douglas R. 1983, "Metamagical Themas: Computer Tournaments of the Prisoner's Dilemma Suggest How Cooperation Evolves". Scientific American 248 (no.5):16-26
• Mitchell ch 14
• Lecture: Solving the Tragedy of the Commons with the Iterated Prisoner's Dilemma

March 28

• Ostrom, Elinor et al, “Revisiting the Commons.” Science 9 April 1999:Vol. 284. no. 5412, pp. 278 - 282 (http://www.sciencemag.org.libproxy.rpi.edu/cgi/content/full/284/5412/278),
• Amartya Sen: "Population Control: Delusion and Reality."
• Lecture: Common Pool Resources
• Lecture: Orstom's Social-Ecological Model

• Optional: special issue on “tragedy of the commons” http://www.sciencemag.org.libproxy.rpi.edu/sciext/sotp/.,
• Optional: http://www.indiana.edu/~workshop/publications/materials/conference_papers/W07-2_Ostrom_DLC.pdf
• Optional: Grabner, David. “Fragments of an Anarchist Anthropology” http://www.eleuthera.it/files/materiali/David_Graeber_Fragments_%20Anarchist_Anthropology.pdf

April 1

• Smart Mobs ch 2 and 5.
• Optional: ch 1, 3, 4.
• Lecture: Animal Altruism
• Lecture: Smart Mobs

April 4

• Clay Shirky, "Cognitive Surplus" chapter 1
• Evgeny Morozov, “Sharing Liberally” Boston Review July 2010.
• "Up for Debate: Can Social Media Solve Real-World Problems?" Evgeny Morozov vs Steven Johnson (New Republic).

In class: http://www.ted.com/talks/chris_anderson_how_web_video_powers_global_innovation.html

April 8  (Guest lecture from David Banks)

• David Banks readings:
  http://thesocietypages.org/cyborgology/2011/09/21/on-performative-internet-memes-planking-owling-stocking/
  http://thesocietypages.org/cyborgology/2011/10/14/what-do-burning-man-and-facebook-have-in-common%E2%80%A6/
  http://thesocietypages.org/cyborgology/2011/12/31/self-organization-and-the-hierarchy-of-institutions/ 
  
• Wasik, Bill. “#Riot: Self-Organized, Hyper-Networked Revolts—Coming to a City Near You.” Wired Jan 2012.

April 11

• Chris Kelty “Geeks, Internets, and Recursive Publics,” Cultural Anthropology20, no. 2 (Summer 2005)
• Eglash and Banks, "Recursive Depth"
• Lecture: Ethics from the bottom-up
• In class video: http://www.ted.com/talks/massimo_banzi_how_arduino_is_open_sourcing_imagination.html

April 15

• Mitchell ch 15-16
• "Kevin Kelly's Complexity Theory: The Politics and Ideology of Self-Organizing Systems.” Steve Best and Douglas Kellner, http://www.uta.edu/huma/illuminations/best7.htm
• In-class experiment: Use http://oracleofbacon.org to find the largest Bacon number in Kevin Bacon’s adjacency matrix.
• In-class experiment: Use network visualization at http://www-958.ibm.com/software/analytics/manyeyes/datasets/alphabet-network-19/versions/1
• In-class experiment: Use http://www.x2d.org/java/projects/fluffschack.jnlp to create an adjacency matrix.

April 18

• Smart Mobs ch 7-8. Benkler, The Wealth of Networks ch 6.
• In class: Benkler video
• In class lecture: Network Theory

Part V The Politics of Self-Organization

April 22 Third paper due

• Terranova, Tiziana. Network Culture (Pluto Press 2004), ch 3 “Free Labour.”
• Postigo, Hector. “America Online Volunteers: Lessons from an Early Co-production Community”International Journal of Cultural Studies, Sep 2009; vol. 12: pp. 451 – 469
• In-class lecture: Basins of attraction from flocks to networks

Apri 25

• Lansing, Stephen & John Miller. “Cooperation, Games and Ecological Feedback: some insights from Bali http://zia.hss.cmu.edu/miller/papers/bali.pdf
• Lansing, two-page “nugget” http://www.artsci.wustl.edu/~anthro/research/Balinese%20Water%20Temples.htm
• Critique of Lansing: Stefan Helmreich. “Digitizing 'Development': Balinese water temples, complexity and the politics of simulation.” Critique of Anthropology, Vol. 19, No. 3, 249-265 (1999)
• Lansing, Stephen. “Foucault and the Water Temples: A Reply to Helmreich” Critique of Anthropology (1999) 20(3):337-346.
• In class video, Lansing on Bali's water temples
• In class lecture, Self-organization in indigneous cultures and contemporary society: a comparison

April 29

• “Self-Organization, Complexity, and Post-Capitalist Cultures” (Arturo Escobar) http://www.choike.org/documentos/wsf_s506_escobar.pdf
• Chesters, Graeme. “Global Complexity and Global Civil Society” http://www.springerlink.com.libproxy.rpi.edu/content/x7306452pux16452/fulltext.pdf
• Newitz, Annalee. “If Code is Free, Why Not Me?” http://www.salon.com/2000/05/26/free_love/
• In class video: Open Source Government
• In class lecture: alternative globalization

May 2 Fourth paper due

• Student presentations

May 6 Final (research) paper due.

• Student presentations

Some texts you might find useful in your research projects for this course:

Politics of self-organization
Haila, Yrjö et al. How Nature Speaks: The Dynamics of the Human Ecological Condition. Duke University Press 2006.

Chesters, Graeme and Welsh, Ian.  Complexity and Social Movements: Protest at the Edge of Chaos. Routeldge 2006.

Geyer, Robert Complexity, Science and Society, Oxford: Radcliffe Publishing 2007.

http://www.marxists.org/subject/science/essays/kropotkin.htm

Complexity theory
R. Lewin, Complexity: Life at the Edge of Chaos. Macmillan Publishing Company, New York, 1992

Complexity: the Emerging Science at the Edge of Order and Chaos by Mitchell M. Waldrop 1992

How Nature Works: the Science of Self-organized Criticality by P. Bak

At Home in the Universe : the Search for Laws of Self-organization and Complexity by Stuart Kauffman

Hidden Order: How Adaptation Builds Complexity by John H. Holland

The Computational Beauty of Nature: Computer Explorations of Fractals, Chaos, Complex Systems and Adaptation by Gary William Flake

Recursion and self-replication
Hofstadter, D. R., Gödel, Escher, Bach: an Eternal Golden Braid, NY: Basic Books, 1979.

Robert A. Freitas Jr., Ralph C. Merkle, Kinematic Self-Replicating Machines, Landes Bioscience, Georgetown, TX, 2004; http://www.MolecularAssembler.com/KSRM.htm

Networks
Six Degrees : the Science of a Connected Age by Duncan J. Watts